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Exact(11)
In any one cluster, there were several consensus sequences for which similarity between the consensus sequences was more than 70%.
Further inspecting the reads mapping to the Aacp114k gene, we observed many differences between the consensus sequences not shared across individual samples (data not shown).
The phylogenetic relationships between the consensus sequences of the different genogroups based on VP4 analysis are shown as an unrooted tree.
Table 3 shows the average amino acid similarity in percent between the consensus sequences within a superfamily and among different superfamilies.
When we observed a discrepancy between the consensus sequences from each of the two amplifications we performed a third amplification and used the consensus sequence from all three amplifications (see Additional File 1).
Further problems of promoter predictions consist in the existence of different sigma factors binding to different recognition sequences and in the variation between the consensus sequences of different bacterial species.
Similar(49)
DNA sequence comparisons between the consensus sequence and publicly funded genome data provided locations of 2.1 million single-nucleotide polymorphisms (SNPs).
Position indicates the position and strand within the consensus motif where the TF is predicted to bind; score is a measure of the match between the consensus sequence and the known binding site sequence with 100 being perfect.
From these alignments they generated contigs and determined differences between the consensus sequence for each strain and the reference sequence.
Specifically, the amino acid similarity ranges from 33.89 percent between the consensus sequence of N. vectensis and one of the consensus sequences from S. mediterranea, to 53.95 percent between the two consensus sequences from S. mediterranea.
A consensus sequence was automatically obtained from this common region, characterised by a minimum size of 200 bases and a divergence between the consensus sequence and any given sequence belonging to the cluster of less than 15%.
More suggestions(16)
between the dream sequences
between the autocorrelation sequences
between the exon sequences
between the partner sequences
between the tRNA sequences
between the precursor sequences
between the myostatin sequences
between the action sequences
between the consensus epitopes
between the training sequences
between the consensus trees
between the pigeonpea sequences
between the agr sequences
between the binding sequences
between the consensus regions
between the video sequences
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