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DNA sequence comparisons between the consensus sequence and publicly funded genome data provided locations of 2.1 million single-nucleotide polymorphisms (SNPs).
Position indicates the position and strand within the consensus motif where the TF is predicted to bind; score is a measure of the match between the consensus sequence and the known binding site sequence with 100 being perfect.
From these alignments they generated contigs and determined differences between the consensus sequence for each strain and the reference sequence.
As the number of passages in the presence of R increases, the genetic distance between the consensus sequence of each population and its parental MARLS clone increases substantially (about 11-fold from passage 35 to passage 60; Figure 3A).
A consensus sequence was automatically obtained from this common region, characterised by a minimum size of 200 bases and a divergence between the consensus sequence and any given sequence belonging to the cluster of less than 15%.
Specifically, the amino acid similarity ranges from 33.89 percent between the consensus sequence of N. vectensis and one of the consensus sequences from S. mediterranea, to 53.95 percent between the two consensus sequences from S. mediterranea.
Similar(51)
In any one cluster, there were several consensus sequences for which similarity between the consensus sequences was more than 70%.
The phylogenetic relationships between the consensus sequences of the different genogroups based on VP4 analysis are shown as an unrooted tree.
Further inspecting the reads mapping to the Aacp114k gene, we observed many differences between the consensus sequences not shared across individual samples (data not shown).
Table 3 shows the average amino acid similarity in percent between the consensus sequences within a superfamily and among different superfamilies.
When we observed a discrepancy between the consensus sequences from each of the two amplifications we performed a third amplification and used the consensus sequence from all three amplifications (see Additional File 1).
More suggestions(17)
between the training sequence
between the testing sequence
between the percept sequence
between the loop sequence
between the signal sequence
between the consensus tetranucleotide
between the microRNA sequence
between the seed sequence
between the consensus indicator
between the attB1 sequence
between the polymerase sequence
between the consensus fingerprint
between the separation sequence
between the consensus brain
between the genome sequence
between the consensus belief
between the leader sequence
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