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Locus order is generally well maintained between the consensus map and the individual maps.
DAGGER generates a consensus map by minimizing the "error" between the consensus map and the linkage maps.
LG1 and LG7 exhibited a slightly scrambled locus order between the consensus map and the accession-specific maps.
To evaluate the quality of the consensus linkage map, we assessed the consistency of locus order between the consensus map and the component maps.
Figure 4 shows the RMS error between the consensus map and the linkage maps for each of the seven barley chromosomes.
The map distance between binned markers is zero, and this information is needed to minimize the error between the consensus map and linkage maps (see below).
Similar(48)
Structural variation was classified as a significant discrepancy between the consensus maps and the hg19 in silico map.
Root mean squared errors (RMSE) in marker order between the consensus maps and the input maps and between the MergeMap and LPmerge consensus maps were calculated with the R package hydroGOF (http://cran.r-project.org/web/packages/hydroGOF/).org/web/packages/hydroGOF/
Of these, there were 9 finished optical map contigs representing chromosome 1, 2, 3, 4, 5, 7, 8, 10, and 12, identified based on the comparison between the consensus maps and the in silico maps from the IRGSP pseudomolecules.
Care was taken in matching homoeologues between the consensus maps of MP1 and MP2 in the map integration, including use of homoeologue-specific SSR markers and allele size matching (Table 3).
Where there was uncertainty in marker order between the consensus maps, LPmerge binned markers into the same map positions, whereas MergeMap assigned unique positions to most markers (Table S4).
More suggestions(17)
between the cryoEM map
between the consensus fingerprint
between the composite map
between the consensus brain
between the framework map
between the period map
between the consensus belief
between the perfusion map
between the goal map
between the learner map
between the comparative map
between the phylogenetic map
between the consensus tetranucleotide
between the consensus indicator
between the present map
between the reflectance map
between the Deviant map
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