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Comprehensive phylogenetic analyses between the complete datasets of NITRs from medaka and zebrafish indicate multiple species-specific expansions of different families of NITRs.
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Table 2 shows the relationship between the complete dataset transactions and those referred to Prosecco.
If undersampling had no influence on profiles, the correlation between the complete dataset and the undersampled ones was r = 1.
If undersampling had no influence on profiles, the correlation between the complete dataset and the undersampled ones should be r = 1.
c The Pearson correlation between the heatmaps of the complete datasets (100%% of simulated reads) in (a) and (b) and the undersampled ones (10 90 %).
Data sub-sets are presented as previews for each of the complete datasets.
The complete datasets are available online in Additional file 2, Dataset A1.
The complete datasets were simulated in two steps.
Class allocations were compared between the ruminant and the complete dataset for each AA.
The relationships among the families in clade 14 were uncertain, and differed between the analysis of the complete dataset and the one based on only nuclear loci.
We used Kappa statistics to compare the agreement between the imputed datasets and the complete dataset.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com