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The similar values for the two metrics within each allele class suggest that the great majority of coding-region nucleotide substitutions have yielded amino acid replacements, a conclusion reinforced by the similarities between the codon diversity and amino acid diversity estimates.
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To measure the levels of observed nucleotide and amino acid variation in the coding regions of S. invicta sequences, we estimated two additional diversity indices for all unique sequences, the codon diversity and amino acid diversity [11].
In this study, the codon diversity, electrostatic charge, molecular volume, polarity, and secondary structure are used to describe the physicochemical and biochemical properties of amino acids.
We also enlisted the GSCC database to determine which gene and gene sets have the least codon diversity.
The secondary structures, codon diversity as well as polarity of AMPs would ensure their abilities to defend microorganisms.
Codon diversity denotes the variation at each in-frame coding-region triplet, while amino acid diversity denotes the variation at the corresponding amino acid residue.
The %INUC scores indicate a clear-cut discrepancy between the morphological diversity observed in neuropterid orders and the low rate of substitution that characterizes the evolution of their codon families.
Differences between the kIsps codon and the optimized codon for (A) B. subtilis and (B) B. 20 licheniformis.
An 8-nt overlap occurred between the termination codon of ORF1b and the initiation codon of ORF2.
The distance between the stop codon of the upstream gene and the start codon of the downstream gene was demonstrated to be of key importance in translational coupling (Levin-Karp et al. 2013).
The relationship between cancer risk and the codon 72 polymorphism of exon 4 needs further investigation.
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