Sentence examples for between the basic residues from inspiring English sources

For the bottom panel of Figure 4, the ZDOCK server was used to calculate the most probable complex of ERK1 [PDB∶2zoqandand HIV MA [PDB∶1uphA] when binding was forced between the basic residues of the Dd motif on MA (Arg22, Lys26, and Lys27) and the CD site of ERK1 (Glu98, Asp179, Asp335, and Asp338 [25]).

Previous explanations of nonrandomized fragmentation often invoked salt-bridging or other interactions between the basic residues and cleavage site.

This finding is of importance since the driving force between the peptides and LPS was shown to be the Coulomb interaction between the basic residues of the peptides (R and K), and the negative charges of LPS [ 33].

Consequent MBP-membrane interactions rely on an accurate stoichiometrical balance between the basic residues of MBP and the acidic headgroups of the lipid bilayer components, as well as on copper ions inducing the compaction of the MBP structure.

This analysis confirmed that the positively charged residues in the membrane proximal JM-A region (i.e. residues 645 657) are involved in interactions with PIP2 for more than 50% of the total contacts, suggesting strong interactions between the basic residues and PIP2 (Fig. 4A,C).

The majority of hydrogen bonds are seen between the side chains of the basic residues (Arg or Lys) with the PO4 groups of lipids.

These weak hydrogen bonds are consistent with the increased flexibility of the intermediate state but eventually become stronger upon formation of the ternary complex, with the interactions between the acidic cluster and the basic residues of the pseudosubstrate.

The above cited set of residues and their accompanying protein:DNA contacts (when present) comprise the most conserved pattern at these respective positions between the non-3-ketosteroid receptors (the basic residues at the positions 160-161 being also extensive to the 3-ketosteroid receptors and other divergent NR classes - see below).

Because several of these point mutations flank or fall within the SH3 binding sites, we also generated a GFP-Lpd 35A 850−1250aa GFP-Lpd 35A 850−1250aawhich lactinonly the bindingesidues that sit between Ena/VASP and Abi1/endophilin binding sites.

(D) Methyltransferase activities for the METTL3-METTL14 harboringers harboring point mutations to the basic residues.

To test this hypothesis, all the basic residues (Lysine) in the region were substituted for the acidic residues (Aspartate).