Sentence examples for between the alignments based from inspiring English sources

Residues included in the core differ between the alignments based on the two algorithms.

To this end, we first define the local kernel alignment based on centralized kernel alignment.

We also tested another alternative from the TBA package called Roast which appears to implement the method described in [23] which builds a multiple alignment based on pairwise comparisons between a reference sequence and all other sequences, thus in theory requiring time linear with respect to the number of sequences, similar to Murasaki.

The motif similarity was defined as the P-value of the gapped alignment between the two PWMs based on the Kullback-Leibler divergence [33] (See Methods).

For all alignment pairs for a read that pass these guards, a junction candidate sequence is constructed by taking the corresponding regions of the reference genome and joining them together, accounting for any overlap between the alignments or for any intermediate bases that are in the read but not in the reference genome.

PINALOG forms the alignment between two PPINs based on the similarities of protein sequence and the protein function between the two networks.

Surprisingly, only 448 contigs are identical between the two assemblies based upon results of a BLASTN alignment [30].

HHPred returns a probability score reflecting both the alignment between HMMs formed based on the query sequence and solved structure sequences, and predicted secondary structure.

In the first subclass, the intron was in a conserved position, i.e. occurring between two aligning bases in the alignment of the coding sequences (Fig.  1).

The conservation of intron position was used as a criterion to identify putative ancestral SKP1-like genes, as suggested by Kong et al. In this study, an intron was considered to be conserved, if it occurred between two aligning bases in the alignment of the coding sequences.

Nucleotide (codon) alignments were based on the amino acid alignments.