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EASE [ 36] was used to investigate the possible overrepresentation of biological processes by sorting the genes found to vary between biopsies into subsets based on GO categories.
A more general probabilistic model called the Maximal Dependence Decomposition (MDD) model, which is a decision tree method, captures potential strong dependencies between signal positions (adjacent and non-adjacent) by dividing the dataset into subsets based on pairwise dependency between positions and modeling each subset separately.
However, individual correlation coefficients for subsets based on Ct value indicated a much higher variation between the two platforms for the low abundant miRNAs (Ct > 30) compared to the moderately (Ct between 25-30) and highly (Ct ≤ 25) expressed miRNAs.
k-means partitions datasets into subsets based on their fitness value.
EST sequences were then split into subsets based on the best blast match.
GD is classified into three clinical subsets based on age and onset of neurological involvement, although the relationship between phenotype and genotype remains obscure (Grabowski, 2008).
We organized functional gene subsets based on gene annotation and pathway information.
The relative distribution of cDCs subsets based on expression of CD8α, CD11b and CD103 did not differ in lymphoid organs or large intestinal tissues at steady state between the two strains (data not shown).
Subsets based on culinary use (crisps/chips, French fries or fresh ware) showed a weaker correlation between reducing sugars and acrylamide formation (data not shown).
After performing PCA on the residuals comparisons of the subsets based on positively loaded versus negatively loaded subsets were performed.
The correlation between the selected optimal subset of channels for alcoholics was explored in a study [24] to select the channel subset based on the mean gamma band power.
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