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Although B. multivorans strains with larger fliC genes clustered together, relationships between strains based on fliC sequences did not generally correlate with genomovar status.
These cyathane derivatives are termed "hericenones" and "erinacines". The levels of these compounds can vary substantially between strains, based on the measurements our team has conducted.
The multiway representation determines a transformation of the data that captures similarities and differences between strains based on two distinct biomarkers.
This tree shows distances between strains based on small adaptations inside mutually conserved genes, which translate into an approximate timeline when assuming consistent rates of evolution.
Genetic distances between strains, based on the SAP8 propeptide alleles, were calculated using the Shriver method (DSW distance) with the Populations1.2.30 software and clustering performed with NTSys2.0 software, by using UPGMA.
The distance between strains, based on Pearson's correlation on a scale from 0 to 2 (0 indicating identical samples), was 0.25 between Y. enterocolitica biotypes 2 4 and biotypes 1A and 1B.
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Results showed an excellent discrimination between the strains based on their carbendazim-resistance following exposure to low concentration of the fungicide (2 mg L−1).
Discrimination between the strains based on their biochemical and serological characteristics is even more unsuccessful [ 9, 10].
Codon usage analysis was also performed to determine whether any significant trends occurred between the strains based on highly translated gene products.
Figure 1 shows the sequence divergence between our strains based on differences in the number of nucleotide substitutions (Liti et al. 2009).
Phage typing is a well-established method for discriminating between Salmonella strains based on their susceptibility to lytic infection by specific bacteriophages [ 11, 12].
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