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Percentages of identity between sequences encoded by orthologous genes are written in bold.
Percentages of identity between sequences encoded by paralogous genes are written in italic.
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The percentage of identity between the PPR protein sequences encoded by the Rfo locus, is above 84%, which precludes phylogenetic analyses on peptide sequences.
Therefore the structural relationships between the GS protein sequences encoded by the four M. tuberculosis glnA genes were investigated by aligning the glnA1 (Rv2220; 478 amino acids), glnA2 (Rv2222; 446 amino acids), glnA3 (Rv1878; 450 amino acids) and glnA4 (Rv2860c; 457 amino acids) -protein sequences according to maximum probability of amino acid identities.
This was done by a thorough examination of amino acid sequences encoded by the DNA sequences between μ and γ1 (based on translation of all reading frames of both sense and anti-sense sequences).
Gad-1 and Gad-2 are antimicrobial peptide (AMP) sequences encoded by paralogous genes.
The protein sequences encoded by genes 1 and 3 are identical (UniProt Knowledgebase AC P10983) [35].
Sequences encoded by different exons are shown in different colors, the sequence corresponding to the EUL domain (pFam) is underlined.
The sequence alignment between cDNAs and the genomic PSL1 indicated the presence of different groups of related PSL sequences encoded by more than one locus.
Thus, there are variations between two Trichoderma virens isolates in the amino acid sequence encoded by this well-conserved gene.
This motif overlaps with the RSLE sequence, encoded by the alternatively spliced exon 28 [10].
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