Sentence examples for between sequence and pHMM from inspiring English sources

Performing local alignments between sequence and pHMM substantially increases the sensitivity both on the level of detected genes and ESTs (100% and 92%, respectively).

To increase the sensitivity of HaMStR, we re-designed the pHMMs such that local alignments between sequence and pHMM are generated during the search (options to the hmmbuild command).

Then the authors compared the performance of structural and sequence pHMM programs at detecting remote homologous sequences.

The Monsanto Company determined a rough sequence of a different strain of Arabidopsis but has made public about 40,000 differences between its sequence and the public one.

After sequencing, polymorphisms (3%) were observed between the strain O sequence and the three other sequences.

We employed 36.85% (2,008 sequences) of the ConoServer entries in the development of our training set, and here sought to assess the accuracy of both the regular expression and pHMM approaches described above to hierarchically classify the entire suite of ConoServer sequences into superfamily and class.

Dr. Roy Whitfield, chief executive of Incyte Pharmaceuticals, which shed 28percentt of its market value during the day, said investors failed to distinguish between genome sequences and gene sequences.

Query data are compared to known conopeptide sequences using regular expressions and pHMMs.

Amino acid sequence analysis of identified peptides revealed high sequence and structural homology between them.

Thus, the so computed PSSM-FMs and pHMMs are descriptors for their respective training sets and serve as input for a database search with PoSSuMsearch2 and hmmsearch, respectively.

To align such proteins, Kováč et al. [ 16] combined profile HMMs (capturing the properties of the repeating motif) and PHMMs (modeling alignments) into a single scoring scheme that can be decoded by a newly proposed algorithm.