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(e) Correlation matrix between samples based on average methylation of CpGs shared across all samples.
No major difference could be observed between samples based on Al2O3 and TiO2: the recovery of the initial state in 1 ns for both samples shows that no significant charge injection from the excited state of the perovskite into TiO2 can be evidenced.
The metabolomics data analysis server Metaboanalyst 3.0 (Wishart Research Group, the University of Alberta, Edmonton, Alberta, Canada) was used to identify clustering of metabolites profiles between samples based on PCA.
Principal component analysis (PCA) can indicate the degree of similarity between samples based on the degree of covariance.
Therefore, the proportion of C/T was compared between samples based on well established methodology previously utilized [ 31- 33].
We define a distance metric between samples based on seven sequencing quality control metrics from Picard (http://broadinstitute.github.io/picard).github.io/picard
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Thus, the students were able to identify and understand the differences between SSR markers, as well as the difference between cassava samples based on each SSR markers.
Mahalanobis distance calculates the distance between two samples based on their mean feature vectors and, and the covariance matrix of the features across all samples in the database.
To investigate the distribution of the phylotypes between the samples based on the taxonomic information, we conducted analyses of classification and phylogeny.
Alternatively, FTIR analysis of the light versus dark grown pea hypocotyls distinguished between the samples based on variance in the polysaccharide fingerprint region [33].
Therefore, instead of searching for classification patterns between tumor samples based on gene expression profiles we used a reverse engineering approach in order to search for common patterns among different tumor samples.
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