Sentence examples for between sample and input from inspiring English sources

After peak identification, we calculated a p-value for each peak between sample and input, and significant peaks were used for further analysis.

A triangle-based distribution with a median length of 150 bp and 99.0% confidence interval for peak pairs, which were unequal between sample and input, were used.

Enriched regions in ChIP-Seq data are determined using a threshold for a minimal read count difference at a particular region between the ChIP sample and input DNA while RNA-Seq data is analyzed using a global threshold for a minimal number of mapped reads.

For our motif analysis, we took log2-ratios between the microarray intensities for the immunoprecipitated sample and input sample, respectively, for each RBP.

JDR provided control samples and input on the manuscript.

To control for differences between sample input, each lane was then normalized to a reference gene (SMYD3 was chosen based on stable expression between glioblastoma and control samples).

In addition, features such as sample size, homogeneity of units under study, ratio between sample size and number of input and output variables, and input/output returns-to-scale orientation also affect the estimated efficiency scores [ 6, 10- 16].

Due to the non-normality of the impact scores, CTV is derived from Spearman's rank correlation coefficients (R p, [32]) between sampled input parameters (p) and resulting impact scores: {mathrm{CTV}}_p=frac{R_p^2}{{displaystyle {sum}_{p=1}^n}{R}_p^2} (6).

The percentage of insertion and substitution reads were similar between CLIP and input samples and cannot be used as CIMS signatures [ 31].

The comparison between Myc and input samples detected 16,912 Myc binding sites at FDR cutoff of 1%.

Loess normalization was applied to the raw intensity files of each array to correct intensity-dependent dye bias and obtain log2 ratios between MIRA and input samples.