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Loci with at least 128 counts between replicates are shown in black, those with less in red.
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The plots of inter-replicate consistency between pairs of replicates are shown in the supplementary material (Figs. 2, 4, 6 and 8).
Probes that are up or down regulated more that 1.5 fold and who's SEM indicate agreement between three technical replicates are shown.
Technical replicates are used for the qPCR data, and where biological replicates are shown there is clearly more variation than between technical replicates, but interpretations of the result are not affected by this level of uncertainty.
Data averaged over at least two biological replicates are shown.
Data from five biological replicates are shown as means ± s.d.
Data from three biological replicates are shown as means ± s.d.
Representative alignments from two biological replicates are shown.
Representative images from three biological replicates are shown.
Three biological replicates are shown for each genotype.
Representative examples from three technical replicates are shown.
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