Sentence examples for between query and reference from inspiring English sources
The degree of difference in genome content between query and reference strains varied depending on HSG.
However, microRNAs are very short (around 22bp) and the problem requires backtracking between query and reference pair.
The -t parameter (alignment identity between query and reference sequences) for miRExpress was set to be 0.9.
Bowtie is able to tolerate up to three nucleotide mismatches between query and reference, translating to minimum values of 90%and90%0% respectively for CIP and CALP.
Similar to Lamb et al. [ 22], the output consists of a non-parametric similarity score generated from the number and weights of the rank-based comparison between query and reference signatures.
The intersect between query and reference signatures (genes driving the similarity score, see Material and Methods) consisted of known dehydration responsive marker genes, namely DREB family genes, including DREB-1A (At4g25480), DREB-2A (At5g05410), DREB-1C (andg25470), anDREBEB 1B (At4g25490), [see Additional file 4].
The parameters used were: ≥ 20% identity to and ≥ 60% coverage between the query and reference sequence and ≥ 50% similarity between the identities of each partial fragment to the reference sequence.
Hence, the matching pairs between the query and reference image do not appear regular and thus homography estimation fails.
An agreement between the query and reference sequences of more than 95% denoted a positive match.
Sequence alignments between the query and reference sequences are also displayed (Fig. 6C).
The obtained alignment is used to identify amino acid differences between the query and reference sequences.
