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The kinetic transition between partitioned and unpartitioned growth of proeutectoid ferrite has been studied for high-purity Fe C Mn and Fe C Ni alloys, and for temperatures just above the eutectoid.
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The chains ran at least four times for 5000000 generations for morphological data ; 10000000, 15000000, or 20000000 generations for molecular partitioned and unpartitioned analyses; and 15000000 generations for partitioned and unpartitioned combined analyses.
We found high support for all the relationships within our reconstructed phylogenies, and topologies were consistent between the Bayesian and maximum-likelihood trees inferred from partitioned and unpartitioned data.
Calculated for partitioned and unpartitioned MrBayes analyses, respectively.
Triplicate MCMC analyses were performed in parallel [ 40] using the STOKES IBM High Performance Computing Cluster at UCF. Bayesian MCMC analyses were carried out using both partitioned and unpartitioned concatenated MLST data.
Because partitioned versus unpartitioned ML analyses of the host planthopper data yielded somewhat different topologies, TreeMap and ParaFit tests were conducted for both partitioned and unpartitioned ML host trees.
Phylogenetic estimates were consistent across Bayesian and maximum-likelihood methods used in this study, including partitioned and unpartitioned analyses on the full data set, and a subset consisting of a single representative per species.
Combining the mitogenome sequences of five new and 12 previously published species within the Delphinidae, we used Bayesian and maximum-likelihood methods to estimate the phylogeny from partitioned and unpartitioned mitogenome sequences.
Maximum likelihood analyses on partitioned and unpartitioned datasets were conducted using Randomised Accelerated Maximum Likelihood, RaxML version 7.4.2 with 100 bootstrap replicates and 10 subsequent thorough ML searches under the general time reversable (GTR) substition model and the gamma model of among site rate heterogeneity [ 52].
Many preliminary runs were conducted on the partitioned and unpartitioned data file to explore parameters.
Both the partitioned and unpartitioned analyses yielded trees with similar topologies but with different likelihoods.
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