Sentence examples for between model and template from inspiring English sources
The model displays that our lactonase enzyme has a putative structure of a metalloenzyme that is hypothesized to contain binding sites for 2 zinc atoms where all the residues interacting with the ligand are completely conserved between model and template.
The best Pgp model produced had less than 0.2% distance restraint violations (159 of944144), less than 0.5% torsional violations (8 of 1475), and an rmsd of 0.96 Å between Cα atoms of the model and template.
RMSD is a cumulative measure of the mean distance between equivalent atoms in the model and template, which is routinely used to compare the similarity of two regions of homologous protein structure.
The modeled range covered residues 34 427, sequence identity between the model and its template was 58% (Supplementary Fig. S1).
A good structural overlapping was noticed between the model and the template, especially in α-helices and β-sheets regions).
The RMSDs over the Cα atoms between the model and the template were 0.32 Å for LdSAcP1 and 0.35 Å for LdMAcP.
This paper presents a reversible template language called XRound which supports round-trip transformations between models and the logic used to encode system properties.
The root mean square difference (rmsd) between the Kv7.1 structural model and the template (Kv1.2) was 0.11 Å for 96 Cα atoms of the aligned amino acids (0.27 Å for 384 backbone atoms).
The root mean square deviations (RMSD) between the main chain atoms of the models and templates were calculated by structural superimposition.
The modeled human UGT1A1 structure was refined by iterative modeling until there is no major difference in the active site between structural assessments of the model and the template [ 35].
