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The challenge is usually to devise MUDs that tradeoff between low complexity and good performance.
In practice, 2-additivity seems to be the best compromise between low complexity and richness of the model [27].
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Previous reports already discussed a relationship between low complexity proteins (LCPs) and recombination rate in Plasmodium falciparum[ 11].
The relationship between low complexity proteins (LCPs) [ 10] and recombination rate has been discussed [ 11].
Two methods were applied: spectrum shaping with low complexity and carrier insertion between two filters.
The main benefits are low cost, low complexity and robustness.
These all show relatively low complexity and anisotropy values.
Alternatively each sister read was treated separately for the low complexity and low quality categories.
Satellite, low complexity, and simple repeats were then excluded [ 28].
Because low-complexity sequences are only defined by sequences with an information threshold lower than a set value, and hence includes both single amino acid repeats and repeats of several residues, we also assessed the relationship between low-complexity composition and its variability across strains.
Here we used the available genomes of 14 Plasmodium falciparum isolates to assess the relationship between low-complexity sequence variation and factors such as nucleotide polymorphism across strains, sequence composition, and protein expression.
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