Not surprisingly, haplotypes from many of these groups were found in W1 individuals, consistent with nuclear data in suggesting that W1 comprises an ancestral, admixed, genetically diverse subpopulation; admixed individuals also shared haplotypes from different wild subpopulations.
The limited phylogenetic cohesiveness of mitochondrial haplotypes from different taxonomic and geographic groups appears to reflect the recency of divergence between the different geographic races of this widespread species.
The solid lines between haplotypes from adjacent haploblocks represent the most common combinations between the haplotypes.
Regarding the recombinant haplotypes, haplotype 18, which was the most frequent (frequency = 0.05), corresponded to a recombination between haplotypes from HGA and HGB (Additional file 6).
In addition, our model can be extended to model imprinting effects in a network of interactive architecture, including haplotype-haplotype interactions from different genomic regions, haplotype-environment interactions, and haplotype effects regulating pharmacodynamic reactions of drugs.
The highest level of sequence identity between pairs was always between genes from different haplotypes, with one exception: RGA08I-1 and RGA08I-2 showed 98% sequence identity to each other as well as to RGA08D-1, suggesting a recent duplication of this gene in the B1 haplotype.
This contact zone is running through some central sites which exhibit haplotypes from three different haplotypes clusters.
Furthermore, the swapping of the N-terminal and C-terminal SLF protein regions between SLFs from different specificity haplotypes leads to specificity changes [ 18].
Furthermore, although no MLMT haplotypes were shared between bamboo rats from different sample sites, 2 MLMT haplotypes (Human18, Guigang and Human32, Nanning; Human22, Hechi and Rat29, 30, 34, and 35, Hezhou) were shared between humans or bamboo rats from different sample sites.
