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Hao et al. [68] pioneered a novel approach for similarity evaluation between graphs based on FCA.
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Potential miRNA-target relationships are first constructed as weighted bipartite graphs based on the sequence binding between miRNAs and mRNAs.
Prepare a series of charts and graphs based on your findings.
In this paper, we call graphs based on graph theory "network graphs".
The main difference between the two frameworks is how we arrive at a string graph: through detecting long overlaps of reads (overlap layout consensus) or through construction of de Bruijn graphs based on k-mers.
Relationships between genes were graphed based on best reciprocal hits and best score ratios, before constructing multiple sequence alignment on each cluster that was derived.
A Neighbor-network graph based on between-breeds FST distances was obtained with the software SplitsTree ver. 4.10 [ 26].
The first criterion was 'acquaintance distance' the number of steps between the delegates on the collaboration graph based on their shared previous acquaintances.
The MCL partitions an underlying graph based on the manipulation of transition probabilities or stochastic flows between nodes of the graph.
Update: see end of article for a revised graph, based on seasonal factors.
They also introduce a conflict graph model based on the distance-based interference model to represent clearly interferences between links.
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