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For genomic shotgun sequencing projects, there is a correlation between genome coverage and the percentage of natural duplicates.
Thus, a balance must be struck with the long march in de novo assembly applications between genome coverage and contig assembly.
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Nevertheless, there was a general correlation between superfamily genome coverage and the number of families found.
Across all seven wAnaITG genomes results showed a significant (P < 0.0001) positive correlation between the average genome coverage and the total number of single nucleotide variants in a given window (fig. 7 A) as would be expected by varying numbers of paralogs of wAnaITG.
Figure 2 shows the relationship between raw reads and scaffolds genome coverage, and sequencing depth.
For E. coli (NCBI taxon id: 562) there were 13941 interactions between 2865 proteins (~72% genome coverage) and for S. cerevisiae (NCBI taxon id: 4932) 38825 interactions covering 5735 proteins (~100% genome coverage).
This may simply be due to differences in genome coverage and genome size between the diatoms, as described below.
The success of linkage map construction supports the reliability of the sequenced RAD markers based on the following criteria i) a small number of singletons ii) consistency with non-RAD marker order iii) segregation distortion between maps in equivalent positions iv) comparable genome coverage and v) comparable map lengths.
Two of them were, for example, in the psbE (7× genome coverage) and atpA (11× genome coverage) gene region, respectively.
Genome coverage and WGA.
Ranking was based on genome coverage and accuracy.
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