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Log10 ratios between each sample in a time course were computed generating all possible pairwise comparisons of the time points.
To classify we then calculated a linear correlation between each sample in the test set and the templates from the training set (for the univariate decoding analysis, when there was only one variable in the sample, we calculated the difference between the test sample and the template, rather than the correlation).
The Jensen Shannon distance (JSD) between each sample in each sub-facet was then computed [ 28], as described by Andersson et al. [ 9].
Between each sample in the source plate, the pins were dipped in a 50% DMSO and water solution, washed for 25 s with dH2O and dried.
For each tissue, we then summarized the similarity between each sample in that tissue and each sample in other tissues by the median correlations, across the tissue pairs that included the target tissue.
To classify our breast tumour samples, Pearson correlations were calculated between each sample in our series and each centroid based on the Norway/Stanford data set (Sorlie et al, 2003).
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Once the sampling begins in Field Z corn, there is a 2 minute interval between collecting each sample in each round, but in Field Z alfalfa and grass, each interval is 1.5 minutes since the chambers are closer together than chambers in Field Z corn.
The stainless steel tool was decontaminated in distilled water between each sampling in order to rid the utensil of any Hg cross contamination.
Calculate the Gaussian distances between y and each sample in X and make up matrix W. Use matrix W to adjust the training samples matrix X to X′. Solve the stable ℓ 1-minimization problem defined in (12).
(3) Calculate the Gaussian distances between y and each sample in X and make up matrix W. Use matrix W to adjust the training samples matrix X to X ′. (4) Solve the stable ℓ 1-minimization problem defined in (12 ).
We computed the correlation of the 56-gene expression profiles between our skin GET and each sample in GSE3204, the NHS showed the highest correlation, followed by the CSS.
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