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We also examined whether the correlations between mCG density and evolutionary rate could differ between different functional categories.
The two genotypes contained 4,892 polymorphic contigs with SNPs unevenly distributed between different functional categories.
Indeed, when we compared the P/A gene numbers between different functional categories, 50.6% of disease resistance associated genes had a relatively high absent frequency (20 60 out of 80 accessions).
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Analysis of the divergently transcribed genes associated with a targeted set of bidirectional promoters is likely to lead to discovery of novel genes involved in development and/or previously undescribed relationships between genes of different functional categories in common or complementary processes/responses.
We next used BLAST2GO to generate 'Biological Process' Gene Ontology (GO) terms for each locus to compare the proportions of different functional categories between loci up- and downregulated during senescence in WT and between high-confidence GPC-A1 and GPC-B2-regulated loci (Table 1).
Next, to determine whether genes of different function categories were overrepresented in high-recombination regions or hotspots, we used a χ test to determine whether genes that are assigned to different functional categories were nonrandomly distributed between these regions.
It is remarkable, however, that the strength of the correlation between degree and rates of evolution is highly variable across the different functional categories.
According to GO annotation, these genes could be classified into 20 different functional categories (Table 1).
(H) The number of metabolites increased and decreased in different functional categories.
(1) Excluded proteins with the same coding vectors, but the different functional categories.
It can be useful to optimize the importance of features for different functional categories.
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