Sentence examples for between binding pocket and from inspiring English sources
That means many contact sites between binding pocket and ligand, which in turn leads to selectivity for the shape of the ligand.
We also analyse the correlation between binding pocket shapes and ligand-based promiscuity predictions using the ligand and pocket shape similarity matrices.
After conducting structural alignments of the individual components of our system HLA-B*57 01 HLA-B*57 01nding peptide bindingbacavir, and co-binding pockete), we concluded that the most significant differences bounden binding pocket, abacavir, and peptide occurred from the peptide amino acid sequence [44].
In the Microcystis McyC data set, this is also the case for the amino acid residue between binding pocket residues 299 and 301.
The second pair (41 184) reflects the possible interaction between the binding pocket and the fingers subdomain.
To gain insight into the mode of interaction between the binding pocket and the hydroxylated benzoyl ring, the X-ray crystal structures of YbdB and YdiI in complex with 2,4-DHP-CoA were determined.
For the substrate binding proteins of the oligopeptide importers, peptide binding usually involves hydrogen bonding between binding pocket amino acid residues of the protein and the main chain of the ligand [9].
The top-ranked 400 poses of the remaining compounds were visually inspected for steric complementarity between compound and binding pocket and for the occurrence of cation π interactions.
This region provides the link between the ATP binding pocket and the channel pore and changes in properties could affect gating of the channel and ligand sensitivity.
Previous reports have indeed shown that the complementarity of the hydrophobic interactions between the pKID binding pocket and peptide ligands plays a critical role for the affinity with which these ligands are bound to the KIX domain.
The atomic distance between the methyl donor in the SAM binding pocket and the N7 acceptor of G0 is about 16 Å in our structure.
