Sentence examples for between array probes and from inspiring English sources

To ensure that these results were not false positives due to altered hybridization between array probes and genetic variants, we mapped probesets of differentially expressed miRNAs to genetic variants contained in the Sanger Mouse Genomes Project data [ 33, 34].

We amplified and sequenced the cytochrome b fragment (as described in [ 29]) in 34 of the 36 individuals used in the aCGH, counted the number of actual mismatches between the obtained sequences and array probes, and compared the hybridization signal intensities between probes with different numbers of mismatches.

We provide mappings between human and mouse exon array probes and off-target transcripts and provide software to run GeneBASE-xhyb http://biogibbs.stanford.edu/~kkapur/GeneBase/.edu/~kkapur/GeneBase/

Availability: We provide mappings between human and mouse exon array probes and off-target transcripts and provide software extending the GeneBASE program for generating gene-level expression estimates including the cross-hybridization correction http://biogibbs.stanford.edu/~kkapur/GeneBase/.edu/~kkapur/GeneBase/

Difficulties that must be overcome in such a method would be to account for cross-hybridization and for differences in hybridization efficiencies between the arrayed probes and their corresponding targets.

Gene Ontology annotations were provided by EcoArray Inc. based on sequence homologies between FHM array probe target sequences and zebrafish, human and mouse genes.

Thus, the interpretation of transcriptome intensities is confounded by Cross-Species Hybridization (CSH), which we have biologically confirmed to exist between human array probes with universal mouse RNAs [ 17].

All other comparisons of DNA methylation between L1/Alu Pyrosequencing and array probes were significantly different in both tissue groups (Fig. 2A and B, all p < 0.001).

For poxviruses, we have observed a similar cross-hybridization between VACV and MPXV array probes with the opposite viral transcript (Figures 2, 4, and 6).

The main effect of probe and the interactions between probe by array, probe by dye and probe by dose accounted for 76.8%, 15.3%, 1.6% and 1.8%, respectively.

A comparison analysis was also run in the same manner as above, with the "between array normalization" that also excluded probe sets that were not common to both chips, thereby generating a combined expression set.