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The largest gap between any two markers was 9.7 cM on linkage group (LG) 6.
LD between any two markers reflects the extent of non-random association between them.
The underlying assumption is that the difference in diversity between any two markers is a function of the distance between these markers.
The kinship matrix was estimated using a subset of 5000 SNPs without any missing genotypes and distributed approximately uniformly across the entire genome (at least 60 kbp between any two markers).
For the BX2 panel, no fewer than 60 animals were typed between any two markers with the exception of Mut and Col9a1, for which only 40 animals could be genotyped in common.
Furthermore, using an average LD threshold to define the haploblocks (L D≥0.45 between any two markers) increased the prediction accuracies for all three traits, although the improvement was most significant for milk protein (up to 3.1%% improvement in prediction accuracy, compared with the individual SNP approach).
Similar(53)
The linkage map used in the present study was an updated version of the map constructed earlier, with 105 marker loci comprising a map length of 1532 cM, with an average distance of 14.6 cM between any two marker loci.
The average distance between any two marker loci was 29.2 cR which corresponds to 2.1 cM or 9.8 Mb.
The average distance between any two marker loci was 29.2 cR, which corresponds to 2.1 cM [ 23] or 9.8 Mb [ 22].
The highest marker density was observed for chromosome 7D, which has an average distance of 20.5 cR between any two marker loci, while the lowest markers density was observed for chromosome 2D, with an average distance of 38.6 cR between any two marker loci.
The distance between two adjacent markers on the linkage groups varied from 0 to 23.7 cM, with an average distance of 1.6 cM between any two adjacent markers.
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