Sentence examples for between all the sequences from inspiring English sources
We first built a weighted network based on the pairwise similarity between all the sequences belonging to Gold Standard data (Figure 2).
Looking at the contiguous assembly of ESTs (Figure 3A), it was quite clear that variation was centered on the third codon position, but there were several small ∼20 base islands of identity between all the sequences.
Evolutionary distances between all the sequences were calculated with DNADIST of the PHYLIP 3.6 package [ 44].
This analysis showed that there was no single motif shared between all the sequences.
We propose to find the k-nearest neighbors of each sequence and then to construct a (k + 1 ) × (k + 1 ) matrix containing the distances between all the sequences (the target sequence and its k-nearest neighbors).
In order to delve into the genomic organization of the different vtx2-phages we performed a progressive Mauve alignment between all the phages sequences used in the nucleotide comparison (Additional file 1: Figure S1).
Surprisingly, the genomic islands in S. maltophila BurA1, C. metallidurans CH4 and B. gladioli BSR3 show strong synteny and similarity between all the ICE sequences, except for the ebyCAB operon and some immediate flanking genes.
To compare the probes of the ARK-genomics arrays to those of goat experiment 4 (NBFGC bovine cDNA array, [ 57]) or goat experiment 6 (CombiMatrix array), a blast comparison between all the spotted sequences was performed.
If a boundary of an STR region was within three repeat unit lengths of the end of the extracted RefSeq sequence, then all the sequence between the boundary of the STR region and the end of the extracted RefSeq sequence was considered as flanking sequence.
Therefore it is important to catalog all the sequence differences between any two organisms so that these can be a basis for designing experiments linking phenotype to genotype.
The neighbor-joining takes a distance matrix between all the pairs of sequences and represents it as a star-like connected tree, where each sequence is an external node (leaf) on the tree.
