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Cuffcompare [ 15] was applied on the Cufflinks output of all the lanes together to define a list of transcripts that are comparable between all the samples.
For each treatment, we selected genes with p-values < 0.05 and a fold change above 2 or below 1/2 in both cell lines, while a comparative global heat map was constructed using an unsupervised hierarchical clustering method with a correlation distance between all the samples and between the genes selected.
The difference in morphologies and size of grooves between all the samples is clearly observed.
When a given sample is taken as a point in the space defined by the variables, the distance between this point and all the other points can be calculated, thereby establishing a matrix that describes the proximity between all the samples studied.
There was a positive correlation between overall gene expression detected between all the samples containing monocytes after both 3 and 24 hours' stimulation with LPS (figure 1).
To enable direct comparisons between all the samples, we focus our analyses on the portions of the FMDV genome that are shared between all of the samples.
Similar(52)
To explore gene expression differences (and similarities) between all of the samples, we carried out an unsupervised hierarchical cluster of the entire dataset.
To further assess this hypothesis, we explored if there were any common TCRγ sequences between all of the samples within a group.
Significant differences between all the grape samples were obtained, the highest value being recorded for Napoca variety in both culture systems (32.12 ± 1.4 μg Trolox/g for organic and 25.07 ± 1.3 μg Trolox/g for conventional) followed at significant difference by Muscat Hamburg and Muscat Ottonel.
(b): Table showing all the Pearson correlation values r between all the single samples analyzed.
Despite this, it is still possible to compare the relative intensities between all the hydrated samples.
More suggestions(15)
between all the ravings
between all the incidents
between all the players
between all the incubators
between all the projects
between all the variables
between all the reactors
between all the teams
between all the touchdowns
between all the phases
between all the parties
between all the instruments
between all the agencies
between all the films
between all the people
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