Sentence examples for between alignments generated by from inspiring English sources

On smaller datasets of closely related genomes, we found agreement between alignments generated by Mugsy, Mauve and TBA.

We then calculated the overlap between the alignments generated by our compression-accelerated tools and their original versions.

We emphasize that our analysis provides an estimate of the lower bound on the difference between optimal and heuristic solution, since alignments generated by MaxPairs are not always optimal (in the strict sense).

To assess the alignment quality, we compared sequence alignments with the structural alignments generated by Fr-TM-align (Pandit and Skolnick, 2008), which allows flexible alignments, and DaliLite (ver. 3.3) (Holm et al., 2008) as reference alignments.

On average the resulting alignments were between 0.61% worse and 0.34% better than the alignments generated by SILVA when using full-length template sequences.

When using the region-specific template sequences, the alignments were between 0.07% worse and 0.40% better than the alignments generated by SILVA.

As a result, the alignments generated by FUGUE represent a better relatedness between the amino acid sequences of the query protein and the template structure.

The quality of these alignments was assessed against the implicit sequence alignments generated by the structure-to-structure alignment program TM-align (Zhang and Skolnick, 2005).

To further study the relationship between these TBDRs and Xcc TBDRs, we performed a comparative study using alignments generated by ClustalW [64].

On the pilot dataset, Galinter alignments were compared to the alignments generated by the I2I-SiteEngine interface comparison method.

To assess whether Galinter produces valid interface alignments, we compared the results of Galinter to the alignments generated by other approaches.