Sentence examples for between a query sequence from inspiring English sources
In the binary minhash classification approach, minhash signature keys are simply intersected with the minhash keys of known classes to calculate the similarity between a query sequence and a known class.
Minhashing is used as a form of lossy compression to reduce the overall size of the training data structure and decrease the processing time required to estimate the similarity between a query sequence and one or more known classes within the system.
BLAT only finds an orthologous region between a query sequence and another single genome.
SSAHA uses a different approach to take advantage of the high similarity expected between a query sequence and the genome.
UCHIME searches for a chimeric alignment between a query sequence (Q) and two candidate parents (A and B).
In each experiment, we simulated a specific minimum taxonomic distance between a query sequence and the reference sequences.
The detailed methodology used for obtaining threshold values (Table 1) is given in section A of Additional File 1. Range of distance values (between vectors corresponding to a query sequence and the closest genome fragment in reference database) to be used for determining an appropriate taxonomic level (TL) of assignment for a given query sequence.
17 From calculated pairwise sequence alignments PROVEAN extracts alignment scores between an unmutated query protein sequence, a query sequence with introduced amino acid variants, and closely related homologous proteins that are known to be functional.
BLAST [ 1, 2] is a popular and effective tool for finding significant alignments between a biological query sequence and a database of subject sequences.
Sequence alignment requires scoring of the similarity between a short query sequence against a set of reference sequences.
TagScan http://www.isrec.isb-sib.ch/tagger/tagscan.html is capable of performing searches for either exact or nearly exact matches (≤ 2 mismatches) between a given query sequence, such as a ZFP target site, and a large database, such as a genomic sequence database [ 51].
