Sentence examples for between a query genome from inspiring English sources

Briefly, RGPFinder searches for genomic regions (minimal size of 5 kb) displaying breaks in synteny between a query genome and a set of closely related genomes.

Comparative-genomics-based thelsequencee the sequence of a query genome to one or more reference genomic sequences to identify elements shared by or differing between the sequences.

This result indicates that in silico CGH (Additional file 1) can discriminate among genes shared between reference and query genomes and those absent in a query genome.

All genes from a query genome are tested, and ordered according to their individually optimized scores.

An LCR segment is likely absent from a query genome, either as a consequence of its deletion from the query genome or its insertion into a reference genome.> -wrap-foot> aObtained in this study.

Phylogenetic relationships between the query genome and SAR11 genomes represented in the metagenomic data are shown in Fig. 1.

The amino acid sequence divergence between the query genome we used and the Sargasso Sea SAR11 populations exceeds the divergence between some microbial genera, suggesting that genomic properties have had ample time to diverge in response to selection.

Ensembl tables of orthology assignment provide two types of homology between a query and search genomes: a one-to-one and a one-to-many homology.

SSAHA uses a different approach to take advantage of the high similarity expected between a query sequence and the genome.

BLAT only finds an orthologous region between a query sequence and another single genome.

Therefore, the detection of a gene fusion in one (query) genome allows the prediction of functional association between corresponding homologous genes that remain separate in another (reference) genome.