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Few large gaps between SNPs were present since the 95th (99th) percentile of this distance was 146 kb (252 kb), the largest gap localized on BTA10 being 2 Mb long.
Few large gaps between SNPs were present since the 95th (99th) percentile of this distance was 189 kb (385 kb), the largest gap localized on BTA10 being 2 Mb long.
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Calculation of haplotype breakdown during determination of |iHS| and Rsb scores was terminated if gaps of >20 kb between adjacent SNPs were present within the dataset For both |iHS| and Rsb approaches, putative selection windows were defined by calculating the distance over which the extended haplotypes decayed to a level of 0.05 in each direction [ 50].
Infinium assay intensity data suggested that 2991 polymorphic SNPs were single copy and another 952 polymorphic SNPs were present in two copies.
Single nucleotide polymorphisms (SNPs) were present in one or more cultivars for all genes (Table 3).
Many of these SNPs are present in drug-resistance genes.
Numerous single nucleotide polymorphisms (SNPs) are present in the matK sequence for the India sample, including an insertion between 465 472 bp not present in any other GenBank® entries.
The correlation (D' and r) between these SNPs are presented [see Additional file 1].
Therefore, only the interaction effect between the two SNPs is presented.
Detailed results of associations between serum concentrations of steroid hormones and SNPs are presented in Additional file 1. SNP rs2630488 within GNRHR showed a nominally significant association (p = 0.04) with estradiol levels in post-menopausal women.
Another intriguing SNP was present in gene E3-E4_4.4 E3-E4_4.442.86% of non-AinC strains presented guanine, whichas less than 10% of the AIEC strains presented this variant.
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