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Indeed, the longer operation time is due to the fact that an extra local search is performed which provides an optimal selection for GA and this leads in better objective function in most cases, especially when zone loading is high and there are many unordered selections for initiating the GA.
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If the new sequence results in a better objective function value, then the new permutation is accepted.
The method simply checks a minimal set of points in the neighborhood of a feasible point to determine whether one of them is in the polytope or yields a better objective function value.
In several situations, such as disaster relief efforts, computer networks, and workload balance, the minimization of the longest route (Min Max) is a better objective function.
However the newly developed algorithm avoids infeasible configurations and often yields better objective function values.
If the neighbor solution has a better objective function value, it is accepted as the new solution, while a fraction of non-improving solutions are accepted in the hope of escaping local optima in search of global optima.
As discussed, this method is a probability-based approach which constructs each generation towards better objective function.
If the generated solution has a better objective function value than the current solution, it is accepted.
In this case, however, there is some correspondence between sequence similarity and homology, so one should hope that the performance of DIALIGN on these data can be improved by to designing better objective functions.
Thus, the instantaneous generation capacity is included in the objective function in order to better consider this variable in long-term operation planning.
Objective function in DE algorithm.
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