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The EpiDesigner BETA software was used to predict the CpG islands: Four amplicons including 92 CpGs were selected (Fig 3); 63 of these CpGs were suitable for analysis by gene-specific amplification using in vitro transcription coupled with mass spectrometry (MS) (Supplementary Table S2).
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Illumina® GenomeStudio software was used for the determination of beta values (percentage of methylation of specific CpG sites).
SPSS (v21) software was used for post-hoc group comparisons of the extracted beta values.
Matlab software was used.
WINVIEW software was used.
The DIYABC 1.0.4.45 beta software package was used to determine which historical demographic scenario could best explain the observed microsatellite polymorphism.
To detect potential recombination strains and possible recombination breakpoints (Martin et al. 2010), recombination detection methods implemented in the RDP4 (beta 16) software were used.
While it's expected that beta software is unfinished and you use it at your own risk, it's abnormal for a beta version of one product (Messages Beta for Mac) to affect a finished app on a different product (iMessage for iPhone).
Stata 12 (Stata Corporation, College Station, TX) and Review Manager 5.2 software (http://ims.cochrane.org/revman) were used for meta-analysis; Trial Sequential Analysis Software, version 0.9 beta (www.ctu.dk/tsa), was used for the trial sequential analyses.
Still, that's what public beta software is for, so you can give your feedback.
PLINK software [30] was used.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com