Sentence examples for best representative sequence from inspiring English sources
3PFDB database was designed to find a best representative sequence (BRS) for each PFAM family (6).
The study also indicates that a best representative sequence, which performs better with the PHI-BLAST than the MQ PSI-BLAST, can help save computational time and achieve better coverage.
Coverage analysis using FASSM method is used as the filtering step to identify the best representative sequence, starting from full length or domain sequences to generate the final profile for a given family.
We had earlier created 3PFDB database as a repository of best representative sequences, selected from each PFAM domain family on the basis of high coverage.
Each gene graph also generates a representative sequence that best represents the graph.
These sequences were grouped according to the TIR sequences, and three best representative elements (Ozana, Ozga, and Ozgana) were chosen for further analyses.
If a domain member is available from multiple species, a representative sequence with the best resolution from any one species was selected.
Multi-FASTA putative ortholog files containing the best representative of each M. flocculare deduced protein sequence for all of the analyzed swine mycoplasmas were used as the input for multiple alignments using the CLUSTALw algorithm with default parameters.
If multiple best scoring hits fulfilled these criteria, the most representative sequence was selected by the following procedure: The average sequence distance (over the length of the whole sequences) between each hit and the other best scoring hits was calculated based on a distance matrix generated in ARB [33].
As the selection of a single, best representative PSSM from different members of the protein sequence families are currently performed in a non-standardized way, the data mining approach used in this work is a primary attempt in this regard.
In addition, the species that have been mapped or sequenced are not necessarily the best representative species for a particular lineage, which could complicate the reconstruction process.
