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The best evolutionary model determined for the sequences was TrN + I + G.
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The best evolutionary model was also determined with MEGA5.
The tree obtained by NJ was refined using the tool PROTTEST [ 46], to determine the best evolutionary model for the set of query proteins [ 47].
The best evolutionary model of nucleotide substitution was determined using jModelTest 0.1.1 [ 102].
The best evolutionary model (general time reversible + invariant sites) for each dataset was determined by using ModelGenerator (7 ).
The best evolutionary model for each alignment used to calculate the phylogenetic trees was determined by MEGA5 software (Tamura et al. 2010).
The Akaike Information Criterion in Modeltest [43] was used to find, the best evolutionary model given the data.
Identification of the best evolutionary model is performed via the AIC approach (see above).
The best evolutionary model for each of the sequenced genes were the six parameter general time reversible (GTR) model of nucleotide substitution (nst = 6, rates = invgamma).
In all cases the best evolutionary model was estimated to be JTT + G (data not show).
The best evolutionary model estimated by jModelTest 0.1.1 for our data was TrN+I+G.
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