The extracellular solute-binding protein (Family 1) has highly conserved sequence across Frankia, with the next best BLAST hits revealing low sequence similarity to sugar-binding proteins in Mesorhizobium loti and Rhizobium leguminosarium (E values of 10-17).
To discover conserved sequence motifs in promoters of up-regulated A. thaliana genes, BEST was applied in the work presented here.
We postulate that RAPTOR performs best in the case when there is significant structural conservation across families, whereas HMMER excels when there is a small but highly conserved sequence signature in members of a superfamily.
Because DNA is always subject to mutation, a highly conserved sequence is a sure sign of DNA that plays some vital role.
Conserved sequence elements are highlighted and identical residues were showed in the consensus line.
TMEM176 sequences have regions of highly conserved sequence with MS4A.
conserved sequence regions to allow development of degenerate primers.
Of the four SNPs, 8 and 9 lie in the best-conserved sequence, with SNP8 being the best conserved SNP across mammals (Supplementary Table 1).
In this manner, conserved sequences stand out.
These conserved sequences are essential for Mg2+- and ATP-binding.
cSaSTT3A-1F/1R and cSaSTT3A-2F/2R were used to get 2 parts of the conserved sequences.
