Sentence examples for best alignment methods from inspiring English sources

Furthermore, some large datasets (such as 16S.T) can be fairly accurately aligned using the best alignment methods, and in these cases, DACTAL may also not provide any improvement in topological accuracy (although it may provide a running time advantage for large enough datasets).

C LZ analysis and MOTIF SAMPLER showed greater PPV in block prediction, but weaker sensitivities, than the best alignment methods.

The difference of what is possible with the best alignment methods (5) to what can be done with rescoring (3) is large.

The best alignment method, as measured by the Robinson-Foulds distance to the BAli-Phy topologies, was PRANK followed by MUSCLE.

If models from the best structural alignment methods are available, rescoring can improve by another large margin (on rescoring only actual sequence-based alignment models).

The alignment-free methods generally performed worse than other methods tested on the 18 taxa tree but were close to the best alignment-based methods for the 52 taxa trees.

The 3-dimensional accuracy determined by best-fit alignment method and volumetric changes were identified by volumetric measurements.

Here too, spaced words was the best alignment-free method, followed by kmacs.

We also include the best alignment-free method that is based on a global network property, namely clustering coefficient and exclude the remaining network distance measures that are already evaluated in Yaveroğlu et al.

The analysis was performed on the Phylogeny.fr platform [ 55] and comprised the following steps: (i) sequences were aligned with T-Coffee (v6.85) [ 53] with the following pair-wise alignment methods: the 10 best local alignments (Lalign_pair) and an accurate global alignment (slow_pair).

Even the best performing MSA method (PRANK) did not have the false-positives under control, but nonetheless did fare better than the other alignment methods (MAFFT, MUSCLE, and CLUSTAL) [40].