Sentence examples for best alignment found by from inspiring English sources
All 454-sequenced reads from the genomic library and other pools were assigned to regions in the K-12 genome by taking the best alignment found by vmatch [13].
The value Rb for each probe was defined as the number of identical bases in the best local alignment found by blastn, divided by the probe length.
If a primary alignment matches the optimal alignment found by SSEARCH, it is a 'match'match
To estimate the mapping quality of a BWA-SW alignment, we fit an empirical formula: 250· c1· c2·(S1− S2)/ S1, where S1 is the score of the best alignment, S2 the score of the second best alignment, c1 equals 1 if the alignment covers more than four seeds or 0.5 otherwise, and c2 equals to 1 if the best alignment is found by both forward forward and reverse reverse alignments or 0.2 otherwise.
For samples sequenced at 50-nt or more, spliced alignment yielded 59% of the TIC alignments found by targeted alignment.
In (1), we find the best alignment parameters by maximizing the similarity score.
In implementation, we do not apply the reverse reverse alignment if the best alignment contains, by default, 5 or more seeds.
For each type of the four combined alignments, we checked hits not found by the native alignments.
All alignments, no more than five points away from the best alignment are reported by Novoalign.
The input of the sequence alignment algorithm is the whole sequence S and the whole sequence T. The algorithm tries then to find the best alignment between S and T by using the similarity measure.
