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The reads are aligned to both genomes, and the best alignment for each read is retained.
Finally, we aligned flanking regions of seeds and chose the best alignment.
If a sequence read aligned to more than one genomic locus, the best alignment was selected.
Aligned reads were further filtered for reads having a unique best alignment score.
"This is the best alignment in leadership we've seen in many years," said Martin E. Robins, director of the Alan M. Voorhees Transportation Center at Rutgers University.
Therefore, the search for the best alignment option has to include the neighboring syllables.
In (1), we have to maximize the similarity score to find the best alignment parameters.
In (1), we find the best alignment parameters by maximizing the similarity score.
The best alignment was observed in a low deflection frequency range from 2 to 10 Hz.
Likewise, the score of a best alignment ending in an unconserved (intergenic) region cannot be calculated from the score of a best alignment ending in a conserved region (intron) of the two sequences.
Given this fact, the score of a best alignment ending in a conserved (intronic) region cannot be calculated from the score of a best alignment ending in an unconserved (intergenic) region of the input genomic sequences.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com