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The effects of false distance constraints (MOHCA-seq hits that are inconsistent with the crystallographic structure in our benchmarks) were reported previously in our tables, which were provided as supplementary files, but they were not discussed thoroughly in the main text.
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However, no specific benchmarks are reported, and we do not obtain a sense of the network I/O as might be helpful amongst the providers.
Details about MRC-VLS benchmark are reported in Table 1, while a complete list of the PDB structures included in the MRC-VLS test set is reported in the Supporting Information (Table S1).
Complete results for every benchmark are reported in the Additional file 1.
Surveillance with benchmarking was reported, by itself, to decrease infection rates in German intensive care units, although the impact for CA-UTI was not as great as observed for ventilator-associated pneumonia or primary blood stream infections [ 14].
Benchmarking was reported as a positive feedback mechanism and stimulating factor (FP3), it makes professionals more aware (DI1) and it is helpful in the communication with health care insurers (IP2).
Error rates of our reconstruction algorithm and the benchmark method were reported.
Kappa values were reported using the benchmarks of Landis and Koch [24].
Kappa values were reported using the benchmarks of Landis and Koch [ 32] (0.81 1 almost perfect agreement, 0.61 0.8 substantial agreement, 0.41 0.6 moderate agreement and 0.21 0.4 fair agreement).
'Whetstone' is a benchmark that is reported as 'Measured floating point speed'.
The results of the Extremal Optimization (EO) implementation applied to the MCNC set of benchmark circuits are reported.
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