The new tool is benchmarked on a set of RNAs with known reference structure.
We also used length parameters (Table S6) benchmarked on the reference databanks — BDGP for D. melanogaster and Repbase Update for A. thaliana — to improve differentiation between presumably truncated and full-length consensus sequences.
We report weak and strong scaling benchmarks of a reference MPCD solvent and a benchmark of a polymer solution with research-relevant interactions and system size.
Benchmarking on reference-free metagenome datasets would have resulted in a set of duplicate clusters and an expected duplication rate but would give no indication of the accuracy of each method for duplicate detection.
The observers are evaluated with a Motor Vehicle Emission Group (NMVEG) cycle using an engine model validated on an experimental benchmark as a reference.
We thus were able to evaluate our classifiers on a reference benchmark, as well as to study their effectiveness when the inputs are not abstracts but full text articles.
Our SES measure was benchmarked against a national reference population, improving generalizability.
The first benchmark is a reference.
One of the preferred benchmarks is a reference site or condition.
Second, we benchmarked PTMClust against three state-of-the-art blind PTM search engines and a PTM refinement algorithm on a reference phosphopeptide dataset.
