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These were benchmarked on a dataset with 222 sires and 50 SNPs, which was typical for each stratum.
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In this contribution two ensemble modeling techniques, namely greedy optimization and model stacking, have been presented and benchmarked on a PCM dataset comprising the bioactivities of COX inhibitors on 11 mammalian cyclooxygenases (Table 1).
Halvade was benchmarked on a whole genome human dataset (NA12878 from Illumina Platinum Genomes).
Performance of OptiType has also been benchmarked on an in-house exome sequencing dataset of 10 ALL patient samples, which have been gathered as part of the iVacALL project (Kyzirakos et al., 2013), yielding an accuracy of 96.7% (CI95: 91.7–100%).
We benchmarked on this dataset with the unsupervised method in the current study.
5 most known stream power concept sediment formulae which are approved by ASCE are used for benchmarking on a wide range of datasets that includes both field and flume (lab) observations.
This disambiguation strategy was recently benchmarked on datasets of similar size to ours, demonstrating a remarkably high precision given its basic approach [35].
The proposed approaches are benchmarked on 22 UCI datasets.
In this study, the effect of consensus size, consensus policy and chemical fingerprint choice was benchmarked on decoy-free datasets.
QSLiMFinder was thoroughly benchmarked on datasets of known motifs and compared with the unmodified SLiMFinder algorithm.
A benchmark test on a dataset of 525 DNA-binding proteins and 550 proteins which do not bind to DNA using jackknife validation showed that SVM-PSSM-DT achieved the best predicting performance with ACC of 79.96%, MCC of 0.62 and AUC of 86.50%, and performed better than other state-of-the-art methods by 4.56-7.414.56-7.41% of ACC, 5-10.4% in terms of AUC and 0.12-0.18 in terms of MCC.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com