Sentence examples for benchmark sets were from inspiring English sources
Sequences of both benchmark sets were not split.
From this pool, 52 benchmark sets were generated that each contained four randomly chosen types of complexes.
These two benchmark sets were merged and then expanded with globular proteins from the PDBSelect dataset [ 40] to prepare a benchmark set for filtering purpose.
Some benchmark sets are run in order to show the effectiveness of the proposed approach.
The MCNC and ISCAS benchmark sets are processed and the area overhead with respect to the synchronous implementation is evaluated.
The approach to time consistency based on families of benchmark sets was initiated by (Tutsch 2008), where the author applied this approach in the context of dynamic risk measures.
Notably, results on the benchmark sets are similar to the results on the whole human transmembrane proteome.
To evaluate the improvement from using domain recurrence and order information, two large-scale benchmark sets are selected.
Since this is generally not the case for complexes involving multiple subunits or large conformational changes upon binding, such complexes in the benchmark set were not considered.
As the best filtering method resulted in 467 true positives (see Table 2), these 467 proteins (134 in 3D benchmark set and 333 in experiment benchmark set) were used to test the topology accuracies of the various prediction methods.
