Exact(2)
Importantly, however, the hamming distance is much smaller if we take into account the fact that the benchmark expression data of Chambers et al. (2007) that we used here represents a mixture of mature and immature erythrocytes.
We have compared a recently developed module-based algorithm, LeMoNe (Learning Module Networks), to a mutual information based direct algorithm, CLR (Context Likelihood of Relatedness), using benchmark expression data and databases of known transcriptional regulatory interactions for Escherichia coli and Saccharomyces cerevisiae.
Similar(58)
The method was empirically applied to a suite of ten well-known benchmark gene expression data sets.
This set of data, therefore, provides a benchmark of expression levels of different genes within mouse muscle tissue, something that was not possible to obtain reliably with microarrays because of variation in sensitivity of hybridization among the probes [ 10].
Experimental results on two benchmarking facial expression databases, i.e., the JAFFE database and the Cohn-Kanade database, demonstrate the effectiveness and promising performance of DKLLE.
This would also enable direct comparison and benchmarking of expression profiles obtained using different technologies.
It was not our intention to provide a technical benchmarking of different expression platforms, because such a benchmarking exercise would require controlled microarray, SAGE and EST experiments starting with identical RNA samples derived from the same tissue specimen, and would be beyond the resources of most laboratories.
His prose style would become a benchmark for Italian expression in the Renaissance.
It is considered to be constitutively expressed in all cells, and as such the gene for GAPDH (gapd) is commonly used as a benchmark reference in expression studies.
While qPCR has some methodological caveats [ 47], it is generally considered a benchmark for gene expression analyses.
As a benchmark for normal expression levels, we also aligned reads to an unaltered genome using TopHat and measured FPKM of all RefSeq genes using Cufflinks [ 17].
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