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Suppose a benchmark dataset consists of two subsets (subcellular locations) with each containing a same number of proteins.
This benchmark dataset consists of 27 SCOP fold classes for 694 protein domains (311 proteins for the training set and 383 proteins for the test set).
The benchmark dataset consists of 2,055 nonredundant query protein sequences selected from the UniProt Reference Clusters (UniRef) database [ 47] (version 30/07/2013).
After the above screening procedures, the final benchmark dataset consists of 1199 J-protein sequences, including 63 type I J-proteins, 55 type II J-proteins, 1061 type III J-proteins, and 20 type IV J-proteins (see Table S1, in Supplementary Material available online at http://dx.doi.org/10.1155/2015/705156).org/10.1155/2015/705156
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The assessment is made on a benchmark dataset consisting of almost four years of one minute resolution electric power consumption data collected from an individual residential customer.
On a benchmark dataset consisting of 52 membrane proteins composed of 80 chains with pairwise sequence identity <20% to avoid homology redundancy, the MemBrain-Rasa achieves a Pearson correlation coefficient of 0.733 and mean absolute error of 13.593, which are significantly enhanced compared to either the machine learning-based or template-based engines.
The benchmark dataset consisted of seventeen ELMs for which there were at least three annotated occurrences in unrelated proteins (Table 1).
Only ATHLATES showed comparable performance on their benchmark dataset consisting of 11 samples.
We also present a comprehensive benchmark dataset consisting of RNA, exome and whole-genome sequencing data.
By collecting data in KEGG, a benchmark dataset consisting of 876 drugs, categorized into four target groups, was constructed.
The second and third benchmark dataset consisted of two 454 GS Junior Titanium runs of an isolate of Escherichia coli O104:H4, containing 137 528 and 135 992 reads, respectively.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com