Since the experiment in Fig. 1F was less representative of multiple replicates, and for reasons described in point #4 below, we removed this panel.
As tabulated below, there is a greater overlap with such dataset in our manuscript (in Author response tables 1 and 2 below, we removed 16 genes whose expression was not mapped on our arrays).> > Lastly, the authors write: "only a small fraction of metabolites showed more than 2-fold changes between the two diets"; are these given in the supplementary material?
Before cluster analysis below, we removed those genes that had average expression values across all time points ≤ 5 or missing values at any time point, leaving 3,673 genes.
By restricting the solution to a pseudo-Markovian structure defined below, we remove the uniform non-degeneracy condition needed in our earlier works (Ekren, I, Touzi, N, Zhang, J, Ann Probab, 44:12016a253, 2016a; Ekren, I, Touzi, N, Zhang, J, Ann Probab, 44:2016b2553, 2016b) to establish the uniqueness result.
In step 2 of e-CCC-Biclustering (details in procedure deleteNonLeftMaximalBiclusters below), we remove from the valid models stored in modelsOcc (identifying right-maximal e-CCC-Biclusters) those not corresponding to left-maximal e-CCC-Biclusters.
Consequently, the percentage of trials where we could gather reliable eye position coordinates was below 50% so we removed the data from these two volunteers from the analyses reported here.
Of the 164 patients described in Reeves et al. [ 52], we focused on the 127 that were diagnosed with some fatigue according to the Intake diagnosis defined below (i.e., we removed the controls).
In response to specific reviewer concerns about the description of the screen (below), we have removed the proof-of-principle details of the screen from Figure 2 (to a child figure and legend for those that would like to see this part of the screen) and have streamlined the text accordingly.
As a rule, when the share of individuals attaining a particular education career is below 5% in a country, we remove from the analysis the treatment and the corresponding observations for that country.
Before implementing a more complicated pruning method (see Network Pruning below), we first remove those nodes that are more than 10% gapped in the MSA.
It focused its criticism on the department's Bureau of Diplomatic Security and Bureau of Near Eastern Affairs; four State Department officials at the assistant secretary level and below were removed from their posts as a consequence.
