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From lines 20 to 31, for every valid regulatory connection in the connectivity matrix, the CMI of the genes with every other gene is evaluated using (7) and if the value is below the user specified threshold (Th) the connection is deleted.
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Then the user specified the bleach ROI.
Next, the user specified an ROI inside the coelomocyte that does not include the outermost membrane.
When the user provides only an 'interesting' input set (set A), set B will be automatically filled with the same number of abstracts as in set A, but randomly chosen from PubMed, excluding abstracts within set A (see text below for details on how abstracts are associated with the Set A input when the user specifies genes).
The user specifies the air inlet and liquid inlet conditions.
The user specifies the relative abundance of each genome sequence in a text-based profile file.
The user specifies a maximum number of clusters, Kmax.
The user specifies a threshold value and a crossing condition.
The user specifies whether to use the entire set or a selected subset of the profiles.
The user specifies the variant position and splice junction at the command line.
We next discard all potential alignments that contain a number of seed matches that falls below a user specified threshold (minMatch).
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com