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Next LEADING and TRAILING steps removed bases from the ends of a read if below a threshold quality of 28.
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Biologically, a threshold quality seems more intuitive.
Reads below a certain threshold (quality filter 15: 95% of the nucleotides of the read with a Phred score above 15; quality filter 20: 95% of the nucleotides of the read with a Phred score above 20) were removed by using the program ConDeTri (Smeds and Kunstner 2011).
The metric defined as SP t) [5] is based on a shortest path (i.e., hop count) approach that excludes links whose quality is below a threshold t.
When a node detects that link quality falls below a threshold (which can be statically or dynamically configured), route recovery is triggered in order to find a new route for the affected flow whose recovery optimizes network performance.
Of note, SNPs with imputation quality scores below a threshold (Rsq < 0.3) were removed from the analysis.
A verification system can choose not to perform matching if the quality score is below a threshold, depending on the computation time of matching and the overhead of re-acquisition of data.
Trimmomatic [ 94] was used to remove any remaining Illumina adapter sequences from reads and to trim bases off the start or the end of a read when the quality score fell below a threshold of 20.
Low quality SNPs are those with cluster properties that fall below a threshold value (e.g. < 97% call rate).
Terminate when RSS falls below a threshold.
Terminate when the decrease in RSS falls below a threshold.
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