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We identified connections as significant if they occurred in a bin that had an error rate below a chosen threshold.
A sub-matrix with a mean squared residue score below a chosen threshold is termed a δ-bicluster.
During data integration, Pointillist classifies elements as "affected", if the element's p-value is below a chosen threshold alpha (0.05 in this study) or "non-affected" otherwise.
In a first step Pointillist classifies elements as "affected", if for any of the items of evidence the quantile value of the element's p-value is below a chosen threshold alpha (0.05 in our case).
To define the parameter dependency of the different response types we made the following definitions: We speak of unresponsiveness if the concentration of nuclear R-Smad/Co-Smad complexes remains below a chosen threshold θ within ten hours of stimulation.
Most GWAS typically include several hundred thousand SNPs, therefore, to help users single out SNPs that they want to include in a gene gene interaction test, we have implemented a filtering option that enables the user to work with a subset of SNPs whose single-SNP association P-values fall below a chosen threshold.
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In the second step, for a chosen threshold probability value δ, we count the number of weeks in which the probability of (WCR, NHB) falls below the threshold.
The need for a chosen threshold is a clear disadvantage.
A threshold policy can be defined in broad terms as follows: control (grazing, harvesting, pesticide application, treatment etc). is suppressed when a specific species abundance is below a previously chosen threshold density; above the threshold, control is applied.
Briefly, an initial A-scan is selected as a reference, and the subsequently acquired A-scans are discarded until the cross-correlation with the reference A-scan decreases below an empirically chosen threshold value.
All GO terms with P-values below a suitably chosen threshold are then assigned to the experiment, with the inherent multiple testing problem being tackled with state-of-the-art approaches.
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CEO of Professional Science Editing for Scientists @ prosciediting.com